Protein-Protein Docking

Methods and Protocols

AvAgnieszka A. Kaczor

Häftad, Engelska, 2025

Del 2780 i serien Methods in Molecular Biology

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Beskrivning

This volume covers a wide array of topics on protein-protein docking ranging from the fundamentals of the method and its recent developments to docking tools and examples of protein-protein docking applications.

Produktinformation

Utgivningsdatum:2025-07-12
Mått:178 x 254 x 21 mm
Vikt:706 g
Format:Häftad
Språk:Engelska
Serie:Methods in Molecular Biology
Antal sidor:362
Förlag:Springer-Verlag New York Inc.
ISBN:9781071639870

Utforska kategorier

Biokemi inom Naturvetenskap och teknik
Biologi inom Naturvetenskap och teknik

Innehållsförteckning

Docking Foundations: From Rigid to Flexible Docking.- Sampling and Scoring in Protein-Protein Docking.- Free-Docking and Template-Based Docking: Physics Versus Knowledge-Based Docking.- Approaches to Backbone Flexibility in Protein-Protein Docking.- From Multiple Protein Docking to Protein-Protein Docking at Interactome Level.- Molecular Dynamics Simulations in Protein-Protein Docking.- Machine Learning Methods in Protein-Protein Docking.- Software and Databases for Protein-Protein Docking.- Software for Predicting Binding Free Energy of Protein–Protein Complexes and Their Mutants.- Assessment of Protein-Protein Docking Models using Deep Learning.- Molecular Docking of Intrinsically Disordered Proteins: Challenges and Strategies.- Challenges of Protein-Protein Docking of the Membrane Proteins.- Assessing Protein-Protein Docking Protocols: Case Studies of G Protein-Coupled Receptor Interactions.- Protein-Protein Docking Approach to GPCR Oligomerization.- Refinement of Docked Protein-Protein Complexes using Repulsive Scaling Replica Exchange Simulations.- Exploiting the Role of Features for Antigens-Antibodies Interaction Site Prediction.- Computational Methods to Target Protein-Protein Interactions.- In Silico Design, Synthesis, and Evaluation of PROTAC against Hematopoietic Prostaglandin D Synthase.