Veterinary Microbiology

The Editors D. Scott McVey, DVM, PhD, DACVM, is Past President of ACVM and the Associate Dean and Director of the Iowa/Nebraska Professional Program for Veterinary Medicine, University of Nebraska Lincoln, Lincoln, Nebraska. Melissa Kennedy, DVM, PhD, DACVM, is Past President of ACVM and Associate Professor and Director of the Biomedical and Diagnostic Sciences Department, College of Veterinary Medicine at University of Tennessee in Knoxville, Tennessee. M.M. Chengappa, BVSc, MVSc, MS, PhD, DACVM, is Past President of ACVM and a University Distinguished Professor in the Department of the Diagnostic Medicine/Pathobiology, College of Veterinary Medicine at Kansas State University in Manhattan, Kansas. Rebecca Wilkes, DVM, PhD, DACVM, is an Associate Professor of Molecular Diagnostics in the Comparative Pathobiology Department and Section Head for molecular and virology sections at the Animal Disease Diagnostic Laboratory at Purdue University in West Lafayette, Indiana.

• List of Contributors xiiAcknowledgments xviiiPreface xixAbout the Companion Website xxPart I Introduction 11 Microbial Infections of Animals 3D. Scott McVey, Melissa Kennedy, and Charles Czuprynski2 Basic Bacteriology 11Tiruvoor G. Nagaraja3 Basic Mycology 29Charles Czuprynski and M.M. Chengappa4 Basic Virology 35Mohamed A. Abouelkhair and Melissa KennedyPart II Bacteriology 415 Family Enterobacteriaceae 43Rodney A. Moxley6 Enterobacteriaceae: Escherichia 56Rodney A. Moxley7 Enterobacteriaceae: Salmonella 75Rodney A. Moxley8 Family Yersiniaceae 88Rodney A. Moxley9 Enterobacteriaceae: Shigella 100Rodney A. Moxley10 Pasteurellaceae: Avibacterium, Bibersteinia, Mannheimia, and Pasteurella 108William B. Crosby and Amelia R. Woolums11 Pasteurellaceae: Actinobacillus 118Bradley W. Fenwick and Andrew N. Rycroft12 Pasteurellaceae: Glaesserella, Haemophilus, and Histophilus 129Amelia R. Woolums13 Bordetella 136Bradley W. Fenwick14 Brucella 151S.C. Olsen and P. Boggiatto15 Burkholderia mallei and Burkholderia pseudomallei 162Sanjeev Narayanan16 Francisella tularensis 168Marilynn A. Larson and Peter C. Iwen17 Moraxella 176John Dustin Loy and Gabriele Maier18 Pseudomonas 183Deepti Pillai19 Taylorella 187Megan E. Jacob20 Spirilla I: Borrelia 192Roman R. Ganta21 Spiral-Curved Organisms II: Brachyspira and Lawsonia 196Gerald E. Duhamel22 Spiral-Curved Organisms III: Campylobacter and Arcobacter 207Gerald E. Duhamel23 Spirilla IV: Helicobacter– the Spiral Microorganisms of the Gastrointestinal Tract and Liver 219Megan E. Jacob24 Spirochetes V: Leptospira 225Sreekumari Rajeev25 Staphylococcus 231George C. Stewart26 Streptococcus and Enterococcus 240George C. Stewart27 Trueperella 252Tiruvoor G. Nagaraja28 Bacillus 257George C. Stewart29 Corynebacterium 265Tiruvoor G. Nagaraja30 Erysipelothrix 273Timothy Frana and Axel Neubauer31 Listeria 280Sanjeev Narayanan32 Rhodococcus 286Seth P. Harris and Joshua Daniels33 Gram-Negative, Non-Spore-Forming Anaerobes 294Tiruvoor G. Nagaraja34 Clostridium 309Iman Mehdizadeh Gohari and John F. Prescott35 Filamentous Bacteria: Actinomyces, Nocardia, Dermatophilus, and Streptobacillus 335Megan E. Jacob36 Mycobacteria 345Raul G. Barletta and David J. Steffen37 Chlamydiaceae: Chlamydia 360Roman R. Ganta38 Mollicutes 364Bonto Faburay and D. Scott McVey39 Rickettsiaceae and Coxiellaceae: Rickettsia and Coxiella 377Roman R. Ganta40 Anaplasmataceae: Anaplasma 381Roman R. Ganta41 Anaplasmataceae: Ehrlichia and Neorickettsia 386Roman R. Ganta42 Bartonellaceae 392Kathryn E. ReifPart III Fungi 40543 Yeasts: Cryptococcus, Malassezia, and Candida 407Lisa M. Pohlman and M.M. Chengappa44 Dermatophytes 418M.M. Chengappa and Lisa M. Pohlman45 Agents of Subcutaneous Mycoses 425Lisa M. Pohlman and M.M. Chengappa46 Agents of Systemic Mycoses 433Lisa M. Pohlman and M.M. ChengappaPart IV Viruses 44947 Parvoviridae 451Rebecca P. Wilkes48 Circoviridae 469Pablo Piñeyro and Sheela Ramamoorthy49 Asfarviridae and Iridoviridae 478Melissa Kennedy, Gustavo Delhon, D. Scott McVey, Hiep Vu, and Manuel Borca50 Papillomaviridae and Polyomaviridae 484Mohamed A. Abouelkhair and Melissa Kennedy51 Adenoviridae 489Yunjeong Kim and Kyeong-Ok Chang52 Herpesviridae 496Rebecca P. Wilkes and Jobin Kattoor53 Poxviridae 522Gustavo Delhon54 Picornaviridae 533Luis L. Rodriguez and Jonathan Arzt55 Caliciviridae 543Mohamed A. Abouelkhair and Melissa Kennedy56 Togaviridae and Flaviviridae 552Christopher C.L. Chase57 Orthomyxoviridae 573Wenjun Ma58 Bunyavirales 589William C. Wilson, Dana Mitzel, Lee W. Cohnstaedt, Leela Noronha, Barbara S. Drolet, and D. Scott McVey59 Paramyxoviridae, Pneumoviridae, Filoviridae, and Bornaviridae 596Stefan Niewiesk and Michael Oglesbee60 Rhabdoviridae 609Susan M. Moore and D. Scott McVey61 Coronaviridae and Tobaniviridae 622Udeni B.R. Balasuriya, Yun Young Go, and Mariano Carossino62 Arteriviridae and Roniviridae 659Udeni B. R. Balasuriya, Mariano Carossino, and Yun Young Go63 Reoviridae 679Barbara S. Drolet, Bethany L. McGregor, Lee W. Cohnstaedt, William C. Wilson, and D. Scott McVey64 Birnaviridae 693Melissa Kennedy and Donald L. Reynolds65 Retroviridae 698Jean-Pierre Frossard66 Transmissible Spongiform Encephalopathies 728Jürgen A. Richt and Nicholas HaleyPart V Control of Infectious Diseases 74367 Immune Responses to Infectious Agents 745Laurel J. Gershwin68 Laboratory Diagnosis 760D. Scott McVey, Bruce Brodersen, Duan Loy, and John Dustin Loy69 Antimicrobial Chemotherapy and Antimicrobial Resistance 771Michael D. Apley70 Vaccines 803D. Scott McVey, Jishu Shi, and Donald Reynolds71 Disinfection and Sterilization 813John Dustin Loy, D. Scott McVey, and M.M. Chengappa72 Epidemiology of Infectious Diseases 818Natalia Cernicchiaro, Ana R.S. Oliveira, and Lee W. CohnstaedtIndex 829