This book provides essential lecture notes on solving large linear saddle-point systems, which arise in a wide range of applications and often pose computational challenges in science and engineering. The focus is on discussing the particular properties of such linear systems, and a large selection of algebraic methods for solving them, with an emphasis on iterative methods and preconditioning. The theoretical results presented here are complemented by a case study on potential fluid flow problem in a real world-application. This book is mainly intended for students of applied mathematics and scientific computing, but also of interest for researchers and engineers working on various applications. It is assumed that the reader has completed a basic course on linear algebra and numerical mathematics.

This book addresses the basic concepts of continuum mechanics, that is, the classical field theory of deformable bodies. The theory is systematically developed, from the kinematics to the balance equations, the material theory, and the entropy principles. In turn, the linear-elastic solids, the ideal liquid and the Newtonian liquid are presented in detail as concrete applications. The book concludes by covering the theory of small motions in a medium with a finite prestress. In general, the emphasis is on presenting the content in a clear and straightforward way that requires only an elementary grasp of calculus, linear algebra, and Newtonian mechanics. The book is intended for students of physics, mechanics, engineering and the geosciences, as well as applied mathematics, with a year or more of college calculus behind them.

This book introduces a class of alignment models based on the so-called Cucker-Smale system as well as its kinetic and hydrodynamic counterparts. Cutting edge research in the area of collective behavior is presented, including emerging techniques from fluid mechanics, fractional analysis, and kinetic theory. Analytical aspects are highlighted throughout, such as regularity theory and long time behavior of solutions. Featuring open problems, readers will be motivated to apply these breakthrough methods to future research.The chapters offer an overview of state of the art research with introductions to core concepts. Chapter One introduces the central focus of the book: The agent-based Cucker-Smale system. Further agent-based systems and alignment systems are covered in chapters Two and Three. Following this are chapters covering the kinetic and hydrodynamic variants of the Cucker-Smale system. The core well-posedness theory of both smooth and singular models is then presented. Chapter Eight discusses the fully developed one-dimensional theory. The final chapter presents some of the known partial results concerning the regularity of multidimensional Euler Alignment systems.Dynamics and Analysis of Alignment Models of Collective Behavior is ideal for graduate students and researchers studying PDEs, especially those interested in the active areas of collective behavior and alignment models.

The investigation of the role of mechanical and mechano-chemical interactions in cellular processes and tissue development is a rapidly growing research field in the life sciences and in biomedical engineering. Quantitative understanding of this important area in the study of biological systems requires the development of adequate mathematical models for the simulation of the evolution of these systems in space and time. Since expertise in various fields is necessary, this calls for a multidisciplinary approach.This edited volume connects basic physical, biological, and physiological concepts to methods for the mathematical modeling of various materials by pursuing a multiscale approach, from subcellular to organ and system level. Written by active researchers, each chapter provides a detailed introduction to a given field, illustrates various approaches to creating models, and explores recent advances and future research perspectives.  Topics covered include molecular dynamics simulations of lipid membranes, phenomenological continuum mechanics of tissue growth, and translational cardiovascular modeling.  Modeling Biomaterials will be a valuable resource for both non-specialists and experienced researchers from various domains of science, such as applied mathematics, biophysics, computational physiology, and medicine.

The goal of this monograph is to develop a mathematical theory of open fluid systems in the framework of continuum thermodynamics. Part I discusses the difference between open and closed fluid systems and introduces the Navier-Stokes-Fourier system as the mathematical model of a fluid in motion that will be used throughout the text. A class of generalized solutions to the Navier-Stokes-Fourier system is considered in Part II in order to show existence of global-in-time solutions for any finite energy initial data, as well as to establish the weak-strong uniqueness principle.  Finally, Part III addresses questions of asymptotic compactness and global boundedness of trajectories and briefly considers the statistical theory of turbulence and the validity of the ergodic hypothesis.

Mesh adaptation methods can have a profound impact on the numerical solution of partial differential equations.  If devised and implemented properly, adaptation significantly reduces the size of the algebraic systems resulting from the discretization, while ensuring that applicable error tolerances are met. In this monograph, drawing from many years of experience, the authors give a comprehensive presentation of metric-based anisotropic hp-mesh adaptation methods.A large part of this monograph is devoted to the derivation of computable interpolation error estimates on simplicial meshes, which take into account the geometry of mesh elements as well as the anisotropic features of the interpolated function. These estimates are then used for the optimization of corresponding finite element spaces in a variety of settings. Both steady and time dependent problems are treated, as well as goal-oriented adaptation. Practical aspects of implementation are also explored, including several algorithms. Many numerical experiments using the discontinuous Galerkin method are presented to illustrate the performance of the adaptive techniques.This monograph is intended for scientists and researchers, including doctoral and master-level students. Portions of the text can also be used as study material for advanced university lectures concerning a posteriori error analysis and mesh adaptation.

Large sparse linear systems of equations are ubiquitous in science, engineering and beyond. This open access monograph focuses on factorization algorithms for solving such systems.  It presents classical techniques for complete factorizations that are used in sparse direct methods and discusses the computation of approximate direct and inverse factorizations that are key to constructing general-purpose algebraic preconditioners for iterative solvers.  A unified framework is used that emphasizes the underlying sparsity structures and highlights the importance of understanding sparse direct methods when developing algebraic preconditioners.  Theoretical results are complemented by sparse matrix algorithm outlines.This monograph is aimed at students of applied mathematics and scientific computing, as well as computational scientists and software developers who are interested in understanding the theory and algorithms needed to tackle sparse systems. It is assumed that the reader has completed a basic course in linear algebra and numerical mathematics.

This volume brings together lecture notes from the two most recent editions of the EMS Summer School Mathematical Aspects of Fluid Flows, held in Kačov, Czech Republic, in May 2019 and 2024. The lectures were taught by leading experts in various fields of mathematical fluid mechanics and offer the current state of the art and emerging trends in the field.The book is organized into two parts:Part I features lecture notes from the 2024 edition, covering quantum fluids, mathematical models of tumor growth, and fluid mixtures—each explored from a mathematical perspective.Part II includes two contributions from the 2019 edition, whose publication was delayed due to the Covid-19 pandemic. These chapters focus on the regularity theory of compressible and incompressible fluid flows, giving an interesting overview of the developments in the field.This volume is an ideal resource for graduate students, early-career researchers, and specialists working in partial differential equations, fluid mechanics, and related areas.

This book provides essential lecture notes on solving large linear saddle-point systems, which arise in a wide range of applications and often pose computational challenges in science and engineering. The focus is on discussing the particular properties of such linear systems, and a large selection of algebraic methods for solving them, with an emphasis on iterative methods and preconditioning. The theoretical results presented here are complemented by a case study on potential fluid flow problem in a real world-application. This book is mainly intended for students of applied mathematics and scientific computing, but also of interest for researchers and engineers working on various applications. It is assumed that the reader has completed a basic course on linear algebra and numerical mathematics.

This book addresses the basic concepts of continuum mechanics, that is, the classical field theory of deformable bodies. The theory is systematically developed, from the kinematics to the balance equations, the material theory, and the entropy principles. In turn, the linear-elastic solids, the ideal liquid and the Newtonian liquid are presented in detail as concrete applications. The book concludes by covering the theory of small motions in a medium with a finite prestress. In general, the emphasis is on presenting the content in a clear and straightforward way that requires only an elementary grasp of calculus, linear algebra, and Newtonian mechanics. The book is intended for students of physics, mechanics, engineering and the geosciences, as well as applied mathematics, with a year or more of college calculus behind them.

This book introduces a class of alignment models based on the so-called Cucker-Smale system as well as its kinetic and hydrodynamic counterparts. Cutting edge research in the area of collective behavior is presented, including emerging techniques from fluid mechanics, fractional analysis, and kinetic theory. Analytical aspects are highlighted throughout, such as regularity theory and long time behavior of solutions. Featuring open problems, readers will be motivated to apply these breakthrough methods to future research.The chapters offer an overview of state of the art research with introductions to core concepts. Chapter One introduces the central focus of the book: The agent-based Cucker-Smale system. Further agent-based systems and alignment systems are covered in chapters Two and Three. Following this are chapters covering the kinetic and hydrodynamic variants of the Cucker-Smale system. The core well-posedness theory of both smooth and singular models is then presented. Chapter Eight discusses the fully developed one-dimensional theory. The final chapter presents some of the known partial results concerning the regularity of multidimensional Euler Alignment systems.Dynamics and Analysis of Alignment Models of Collective Behavior is ideal for graduate students and researchers studying PDEs, especially those interested in the active areas of collective behavior and alignment models.

The investigation of the role of mechanical and mechano-chemical interactions in cellular processes and tissue development is a rapidly growing research field in the life sciences and in biomedical engineering. Quantitative understanding of this important area in the study of biological systems requires the development of adequate mathematical models for the simulation of the evolution of these systems in space and time. Since expertise in various fields is necessary, this calls for a multidisciplinary approach.This edited volume connects basic physical, biological, and physiological concepts to methods for the mathematical modeling of various materials by pursuing a multiscale approach, from subcellular to organ and system level. Written by active researchers, each chapter provides a detailed introduction to a given field, illustrates various approaches to creating models, and explores recent advances and future research perspectives.  Topics covered include molecular dynamics simulations of lipid membranes, phenomenological continuum mechanics of tissue growth, and translational cardiovascular modeling.  Modeling Biomaterials will be a valuable resource for both non-specialists and experienced researchers from various domains of science, such as applied mathematics, biophysics, computational physiology, and medicine.

The goal of this monograph is to develop a mathematical theory of open fluid systems in the framework of continuum thermodynamics. Part I discusses the difference between open and closed fluid systems and introduces the Navier-Stokes-Fourier system as the mathematical model of a fluid in motion that will be used throughout the text. A class of generalized solutions to the Navier-Stokes-Fourier system is considered in Part II in order to show existence of global-in-time solutions for any finite energy initial data, as well as to establish the weak-strong uniqueness principle.  Finally, Part III addresses questions of asymptotic compactness and global boundedness of trajectories and briefly considers the statistical theory of turbulence and the validity of the ergodic hypothesis.

Mesh adaptation methods can have a profound impact on the numerical solution of partial differential equations.  If devised and implemented properly, adaptation significantly reduces the size of the algebraic systems resulting from the discretization, while ensuring that applicable error tolerances are met. In this monograph, drawing from many years of experience, the authors give a comprehensive presentation of metric-based anisotropic hp-mesh adaptation methods.A large part of this monograph is devoted to the derivation of computable interpolation error estimates on simplicial meshes, which take into account the geometry of mesh elements as well as the anisotropic features of the interpolated function. These estimates are then used for the optimization of corresponding finite element spaces in a variety of settings. Both steady and time dependent problems are treated, as well as goal-oriented adaptation. Practical aspects of implementation are also explored, including several algorithms. Many numerical experiments using the discontinuous Galerkin method are presented to illustrate the performance of the adaptive techniques.This monograph is intended for scientists and researchers, including doctoral and master-level students. Portions of the text can also be used as study material for advanced university lectures concerning a posteriori error analysis and mesh adaptation.

Large sparse linear systems of equations are ubiquitous in science, engineering and beyond. This open access monograph focuses on factorization algorithms for solving such systems.  It presents classical techniques for complete factorizations that are used in sparse direct methods and discusses the computation of approximate direct and inverse factorizations that are key to constructing general-purpose algebraic preconditioners for iterative solvers.  A unified framework is used that emphasizes the underlying sparsity structures and highlights the importance of understanding sparse direct methods when developing algebraic preconditioners.  Theoretical results are complemented by sparse matrix algorithm outlines.This monograph is aimed at students of applied mathematics and scientific computing, as well as computational scientists and software developers who are interested in understanding the theory and algorithms needed to tackle sparse systems. It is assumed that the reader has completed a basic course in linear algebra and numerical mathematics.

This volume brings together lecture notes from the two most recent editions of the EMS Summer School Mathematical Aspects of Fluid Flows, held in Kačov, Czech Republic, in May 2019 and 2024. The lectures were taught by leading experts in various fields of mathematical fluid mechanics and offer the current state of the art and emerging trends in the field.The book is organized into two parts:Part I features lecture notes from the 2024 edition, covering quantum fluids, mathematical models of tumor growth, and fluid mixtures—each explored from a mathematical perspective.Part II includes two contributions from the 2019 edition, whose publication was delayed due to the Covid-19 pandemic. These chapters focus on the regularity theory of compressible and incompressible fluid flows, giving an interesting overview of the developments in the field.This volume is an ideal resource for graduate students, early-career researchers, and specialists working in partial differential equations, fluid mechanics, and related areas.