RNA Recognition

Amanda E. Hargrove is at Duke University, USA

• 1. Preparation of cooperative RNA recognition complexes for crystallographic structural studiesChen Qiu, Aaron C. Goldstrohm and Traci M. Tanaka Hall2. Methods for thermal denaturation studies of nucleic acids in complex with fluorogenic dyesLauren M. Aufdembrink, Tanner G. Hoog, Matthew R. Pawlak, Benjamin F. Bachan, Joseph M. Heili and Aaron E. Engelhart3. Identifying and validating small molecules interacting with RNA (SMIRNAs)Matthew D. Disney, Sai Pradeep Velagapudi, Yue Li, Matthew G. Costales and Jessica L. Childs-Disney4. Dynamic combinatorial chemistry as a rapid method for discovering sequence-selective RNA-binding compoundsJohn D. McAnany and Benjamin L. Miller5. A click chemistry assay to identify natural product ligands for pre-microRNAsAmanda L. Garner, Daniel A. Lorenz and Erin E. Gallagher6. Differentiation and classification of RNA motifs using small molecule-based pattern recognitionGiacomo Padroni, Christopher S. Eubanks and Amanda E. Hargrove7. Ligand-observed NMR techniques to probe RNA-small molecule interactionsDavid R. Calabrese, Colleen M. Connelly and John S. Schneekloth Jr.8. Synthetic bPNAs as allosteric triggers of hammerhead ribozyme catalysisYufeng Liang, Jie Mao and Dennis Bong9. Using Rosetta for RNA homology modelingAndrew Watkins, Ramya Rangan and Rhiju Das10. Monitoring co-transcriptional folding of riboswitches through helicase unwindingChristopher P. Jones, Subrata Panja, Sarah A. Woodson and Adrian R. Ferré-D’Amaré11. Strategies for understanding RNA recognition by X-ray and NMR methodsAiai Sun, Kaiyi Huang, Luqian Zheng and Aiming Ren12. Sensitive detection of structural features and rearrangements in long, structured RNA moleculesRebecca L. Adams, Nicholas C. Huston, Rafael C.A. Tavares and Anna M. Pyle13. A fluorescent aminosugar to rapidly screen and study RNA bindersNihar Ranjan and Dev P. Arya14. The use of electrospray ionization mass spectrometry to monitor RNA-ligand interactionsDanielle N. Dremann and Christine S. Chow15. Design of RNA-targeting macrocyclic peptidesMatthew J. Walker and Gabriele Varani16. Molecular recognition of HIV-1 RNAs with branched peptidesAshley N. Peralta, Yumin Dai, Chringma Sherpa, Stuart F.J. Le Grice and Webster L. Santos17. Sequence-specific recognition of structured RNA by triplex-forming peptide nucleic acidsDziyana Hnedzko and Eriks Rozners18. Evaluating riboswitch optimalityHannah Wayment-Steele, Michelle Wu, Michael Gotrik and Rhiju Das