RNA Folding

Methods and Protocols

AvRonny Lorenz

Häftad, Engelska, 2025

Del 2726 i serien Methods in Molecular Biology

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Beskrivning

To understand and predict the behavior and function of RNAs, sophisticated tools are required to simulate and analyze their potential for forming structures.

Produktinformation

Utgivningsdatum:2025-05-24
Mått:178 x 254 x 23 mm
Vikt:779 g
Format:Häftad
Språk:Engelska
Serie:Methods in Molecular Biology
Antal sidor:402
Förlag:Springer-Verlag New York Inc.
ISBN:9781071635216

Utforska kategorier

Biokemi inom Naturvetenskap och teknik

Innehållsförteckning

Estimating RNA Secondary Structure Folding Free Energy Changes with efn2.- VarGibbs Usage in the Optimization of Nearest-Neighbor Parameters and Prediction of Melting Temperature of RNA Duplexes.- RNA Secondary Structure Thermodynamics.- RNA Secondary Structure Modeling following the IPANEMAP Workflow.- How Parameters Influence SHAPE-Directed Predictions.- Classified Dynamic Programming in RNA Structure Analysis.- Classification and Identification of Non-Canonical Base Pairs and Structural Motifs.- Modified Nucleotides and RNA Structure Prediction.- How to do RNA-RNA Interaction Prediction? A Use-Case Driven Handbook using IntaRNA.- LocARNA 2.0: Versatile Simultaneous Alignment and Folding of RNAs.- Evolutionary Structure Conservation and Covariance Scores.- Developing Complex RNA Design Applications in the Infrared Framework.- A Guide to Computational Co-Transcriptional Folding featuring the SRP RNA.- Assessing theQuality of Co-Transcriptional Folding Simulations.- The Multiscale Ernwin/SPQR RNA Structure Prediction Pipeline.