Bacterial Pangenomics

Methods and Protocols

AvAlessio Mengoni,Giovanni Bacci

Inbunden, Engelska, 2021

Del i serien Methods in Molecular Biology

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Beskrivning

This completely revised edition explores novel discoveries in bacterial genomic research, with a focus on technical and computational improvements as well as methods used for bacterial pangenome analysis, which relies on microbiome studies and metagenomic data.

Produktinformation

Utgivningsdatum:2021-05-07
Mått:178 x 254 x 21 mm
Vikt:729 g
Format:Inbunden
Språk:Engelska
Serie:Methods in Molecular Biology
Antal sidor:268
Upplaga:2
Förlag:Springer-Verlag New York Inc.
ISBN:9781071610985

Utforska kategorier

Innehållsförteckning

PacBio-Based Protocol for Bacterial Genomes Assembly.- The Illumina Sequencing Protocol and the NovaSeq 6000 System.- Comparative Analysis of Core and Accessory Genes in Co-Expression Network.- Inferring Core Genome Phylogenies for Bacteria.- Inferring Phylogenomic Relationship of Microbes Using Scalable Alignment-Free Methods.- Fast Phylogeny Reconstruction from Genomes of Closely Related Microbes.- Comparative Genomics, from the Annotated Genome to Valuable Biological Information: A Case Study.- Accurate Annotation of Microbial Metagenomic Genes and Identification of Core Sets.- Metagenomic Assembly: Reconstructing Genomes from Metagenomes.- Genome Recovery, Functional Profiling, and Taxonomic Classification from Metagenomes.- Functional Metagenomics for Identification of Antibiotic Resistance Genes (ARGs).- Host Trait Prediction from High-Resolution Microbial Features.- Phylogenetic Methods for Genome-Wide Association Studies in Bacteria.- Simple, Reliable, and Time-Efficient Manual Annotation of Bacterial Genomes with MAISEN.- A Compendium of Bioinformatic Tools for Bacterial Pangenomics to Be Used by Wet-Lab Scientists.- A Protocol for Teaching Basic Next Generations Sequencing (NGS) Analysis Skills to Undergraduate Students Using Bash and R.