Lecture Notes on Mathematical Modelling in the Life Sciences – serie
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22 produkter
22 produkter
1 213 kr
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Mathematical biomedicine is a rapidly developing interdisciplinary field of research that connects the natural and exact sciences in an attempt to respond to the modeling and simulation challenges raised by biology and medicine. There exist a large number of mathematical methods and procedures that can be brought in to meet these challenges and this book presents a palette of such tools ranging from discrete cellular automata to cell population based models described by ordinary differential equations to nonlinear partial differential equations representing complex time- and space-dependent continuous processes. Both stochastic and deterministic methods are employed to analyze biological phenomena in various temporal and spatial settings. This book illustrates the breadth and depth of research opportunities that exist in the general field of mathematical biomedicine by highlighting some of the fascinating interactions that continue to develop between the mathematical and biomedical sciences. It consists of five parts that can be read independently, but are arranged to give the reader a broader picture of specific research topics and the mathematical tools that are being applied in its modeling and analysis. The main areas covered include immune system modeling, blood vessel dynamics, cancer modeling and treatment, and epidemiology. The chapters address topics that are at the forefront of current biomedical research such as cancer stem cells, immunodominance and viral epitopes, aggressive forms of brain cancer, or gene therapy. The presentations highlight how mathematical modeling can enhance biomedical understanding and will be of interest to both the mathematical and the biomedical communities including researchers already working in the field as well as those who might consider entering it. Much of the material is presented in a way that gives graduate students and young researchers a starting point for their own work.
1 178 kr
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Waves in Neural Media: From Single Neurons to Neural Fields surveys mathematical models of traveling waves in the brain, ranging from intracellular waves in single neurons to waves of activity in large-scale brain networks. The work provides a pedagogical account of analytical methods for finding traveling wave solutions of the variety of nonlinear differential equations that arise in such models. These include regular and singular perturbation methods, weakly nonlinear analysis, Evans functions and wave stability, homogenization theory and averaging, and stochastic processes. Also covered in the text are exact methods of solution where applicable. Historically speaking, the propagation of action potentials has inspired new mathematics, particularly with regard to the PDE theory of waves in excitable media. More recently, continuum neural field models of large-scale brain networks have generated a new set of interesting mathematical questions with regard to the solution of nonlocal integro-differential equations. Advanced graduates, postdoctoral researchers and faculty working in mathematical biology, theoretical neuroscience, or applied nonlinear dynamics will find this book to be a valuable resource. The main prerequisites are an introductory graduate course on ordinary differential equations or partial differential equations, making this an accessible and unique contribution to the field of mathematical biology.
Transmission Dynamics of Tick-Borne Diseases with Co-Feeding, Developmental and Behavioural Diapause
Häftad, Engelska, 2020
332 kr
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This monograph introduces some current developments in the modelling of the spread of tick-borne diseases. Effective modelling requires the integration of multiple frameworks. Here, particular attention is given to the previously neglected issues of tick developmental and behavioral diapause, tick-borne pathogen co-feeding transmission, and their interactions. An introduction to the required basics of structured population formulations and delay differential equations is given, and topics for future study are suggested. The described techniques will also be useful in the study of other vector-borne diseases. The ultimate aim of this project is to develop a general qualitative framework leading to tick-borne disease risk predictive tools and a decision support system.The target audience is mathematical biologists interested in modelling tick population dynamics and tick-borne disease transmission, and developing computational tools for disease prevention and control.
631 kr
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This book discusses the mathematical simulation of biological systems, with a focus on the modeling of gene expression, gene regulatory networks and stem cell regeneration.
Meta-Ecosystem Dynamics
Understanding Ecosystems Through the Transformation and Movement of Matter
Häftad, Engelska, 2021
538 kr
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This book presents current meta-ecosystem models and their derivation from classical ecosystem and metapopulation theories. Specifically, it reviews recent modelling efforts that have emphasized the role of nonlinear dynamics on spatial and food web networks, and which have cast their implications within the context of spatial synchrony and ecological stoichiometry. It suggests that these recent advances naturally lead to a generalization of meta-ecosystem theories to spatial fluxes of matter that have both a trophic and non-trophic impact on species.Ecosystem dynamics refers to the cycling of matter and energy across ecological compartments through processes such as consumption and recycling. Spatial dynamics established its ecological roots with metapopulation theories and focuses on scaling up local ecological processes through the limited movement of individuals and matter. Over the last 15 years, theories integrating ecosystem and spatial dynamics have quickly coalesced into meta-ecosystem theories, the focus of this book.The book will be of interest to graduate students and researchers who wish to learn more about the synthesis of ecosystem and spatial dynamics, which form the foundation of the theory of meta-ecosystems.
829 kr
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Motivated by the question of how the nervous system deals with these feedback control challenges, there is a discussion of ‘’microchaotic’’ fluctuations in balance control and how robust control can be achieved in the face of uncertainties in the estimation of control parameters.
965 kr
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This book provides an introduction to the analysis of stochastic dynamic models in biology and medicine. For each example, the biological background is described, and mathematical models are developed following a unified set of principles.
522 kr
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This book presents the basic theoretical concepts of dynamical systems with applications in population dynamics. Existence, uniqueness and stability of solutions, global attractors, bifurcations, center manifold and normal form theories are discussed with cutting-edge applications, including a Holling's predator-prey model with handling and searching predators and projecting the epidemic forward with varying level of public health interventions for COVID-19.As an interdisciplinary text, this book aims at bridging the gap between mathematics, biology and medicine by integrating relevant concepts from these subject areas, making it self-sufficient for the reader. It will be a valuable resource to graduate and advance undergraduate students for interdisciplinary research in the area of mathematics and population dynamics.
Introduction to Reaction-Diffusion Equations
Theory and Applications to Spatial Ecology and Evolutionary Biology
Häftad, Engelska, 2022
431 kr
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This book introduces some basic mathematical tools in reaction-diffusion models, with applications to spatial ecology and evolutionary biology. It is divided into four parts.The first part is an introduction to the maximum principle, the theory of principal eigenvalues for elliptic and periodic-parabolic equations and systems, and the theory of principal Floquet bundles.The second part concerns the applications in spatial ecology. We discuss the dynamics of a single species and two competing species, as well as some recent progress on N competing species in bounded domains. Some related results on stream populations and phytoplankton populations are also included. We also discuss the spreading properties of a single species in an unbounded spatial domain, as modeled by the Fisher-KPP equation.The third part concerns the applications in evolutionary biology. We describe the basic notions of adaptive dynamics, such as evolutionarily stable strategies and evolutionarybranching points, in the context of a competition model of stream populations. We also discuss a class of selection-mutation models describing a population structured along a continuous phenotypical trait.The fourth part consists of several appendices, which present a self-contained treatment of some basic abstract theories in functional analysis and dynamical systems. Topics include the Krein-Rutman theorem for linear and nonlinear operators, as well as some elements of monotone dynamical systems and abstract competition systems.Most of the book is self-contained and it is aimed at graduate students and researchers who are interested in the theory and applications of reaction-diffusion equations.
1 071 kr
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This book provides a self-contained introduction to a new class of stochastic models for systems of spiking neurons. These systems have a large number of interacting components, each one evolving as a stochastic process with a memory of variable length. Several mathematical tools are put to use, such as Markov chains, stochastic chains having memory of variable length, point processes having stochastic intensity, Hawkes processes, random graphs, mean field limits, perfect sampling algorithms, the Context algorithm, and statistical model selection.The book’s focus on mathematically tractable objects distinguishes it from other texts on theoretical neuroscience. The biological complexity of neurons is not ignored, but reduced to some of its main features, such as the intrinsic randomness of neuronal dynamics. This reduction in complexity aims at explaining and reproducing statistical regularities and collective phenomena that are observed in experimental data, an approach that leads to mathematically rigorous results. With an emphasis on a constructive and algorithmic point of view, this book is directed towards mathematicians interested in learning about stochastic network models and their neurobiological underpinning, and neuroscientists interested in learning how to build and prove results with mathematical models that relate to actual experimental settings.
1 071 kr
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The book provides a self-contained and complete description of the long time evolution of the solutions to a class of one-dimensional reaction–diffusion equations, in which the diffusion is given by an integral operator.
539 kr
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This book provides an overview of recent mathematical models for dynamics in cellular systems and offers a unique vision of the field by prominent experts. It covers, among others, the regulatory basis of oscillations in biological systems;
433 kr
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This book brings theories in nonlinear dynamics, stochastic processes, irreversible thermodynamics, physical chemistry and biochemistry together in an introductory but formal and comprehensive manner. Coupled with examples, the theories are developed stepwise, starting with the simplest concepts and building upon them into a more general framework. Furthermore, each new mathematical derivation is immediately applied to one or more biological systems. The last chapters focus on applying mathematical and physical techniques to study systems such as: gene regulatory networks and molecular motors.The target audience of this book are mainly final year undergraduate and graduate students with a solid mathematical background (physicists, mathematicians and engineers), as well as with basic notions of biochemistry and cellular biology. This book can also be useful to students with a biological background who are interested in mathematical modeling and have a working knowledge of calculus, differential equations and a basic understanding of probability theory.
539 kr
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This book on mathematical modeling of biological processes includes a wide selection of biological topics that demonstrate the power of mathematics and computational codes in setting up biological processes with a rigorous and predictive framework.
486 kr
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This book presents several fundamental questions in mathematical biology such as Turing instability, pattern formation, reaction-diffusion systems, invasion waves and Fokker-Planck equations. These are classical modeling tools for mathematical biology with applications to ecology and population dynamics, the neurosciences, enzymatic reactions, chemotaxis, invasion waves etc. The book presents these aspects from a mathematical perspective, with the aim of identifying those qualitative properties of the models that are relevant for biological applications. To do so, it uncovers the mechanisms at work behind Turing instability, pattern formation and invasion waves. This involves several mathematical tools, such as stability and instability analysis, blow-up in finite time, asymptotic methods and relative entropy properties. Given the content presented, the book is well suited as a textbook for master-level coursework.
Data-driven Modelling of Structured Populations
A Practical Guide to the Integral Projection Model
Häftad, Engelska, 2016
461 kr
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This book is a “How To” guide for modeling population dynamics using Integral Projection Models (IPM) starting from observational data. It is written by a leading research team in this area and includes code in the R language (in the text and online) to carry out all computations. The intended audience are ecologists, evolutionary biologists, and mathematical biologists interested in developing data-driven models for animal and plant populations. IPMs may seem hard as they involve integrals. The aim of this book is to demystify IPMs, so they become the model of choice for populations structured by size or other continuously varying traits. The book uses real examples of increasing complexity to show how the life-cycle of the study organism naturally leads to the appropriate statistical analysis, which leads directly to the IPM itself. A wide range of model types and analyses are presented, including model construction, computational methods, and the underlying theory, with the more technical material in Boxes and Appendices. Self-contained R code which replicates all of the figures and calculations within the text is available to readers on GitHub.Stephen P. Ellner is Horace White Professor of Ecology and Evolutionary Biology at Cornell University, USA; Dylan Z. Childs is Lecturer and NERC Postdoctoral Fellow in the Department of Animal and Plant Sciences at The University of Sheffield, UK; Mark Rees is Professor in the Department of Animal and Plant Sciences at The University of Sheffield, UK.
555 kr
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This is a short and self-contained introduction to the field of mathematical modeling of gene-networks in bacteria. As an entry point to the field, we focus on the analysis of simple gene-network dynamics. The notes commence with an introduction to the deterministic modeling of gene-networks, with extensive reference to applicable results coming from dynamical systems theory. The second part of the notes treats extensively several approaches to the study of gene-network dynamics in the presence of noise—either arising from low numbers of molecules involved, or due to noise external to the regulatory process. The third and final part of the notes gives a detailed treatment of three well studied and concrete examples of gene-network dynamics by considering the lactose operon, the tryptophan operon, and the lysis-lysogeny switch. The notes contain an index for easy location of particular topics as well as an extensive bibliography of the current literature. The target audience of these notes are mainly graduates students and young researchers with a solid mathematical background (calculus, ordinary differential equations, and probability theory at a minimum), as well as with basic notions of biochemistry, cell biology, and molecular biology. They are meant to serve as a readable and brief entry point into a field that is currently highly active, and will allow the reader to grasp the current state of research and so prepare them for defining and tackling new research problems.
1 391 kr
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These models include delay equations, demographic models, age structured models, Lotka-Volterra systems, replicator systems, genetic models, game theory, Nash equilibria, evolutionary stable strategies, ecological models, epidemiological models, random walks and reaction-diffusion models.
Methods and Models in Mathematical Biology
Deterministic and Stochastic Approaches
Häftad, Engelska, 2015
965 kr
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This book developed from classes in mathematical biology taught by the authors over several years at the Technische Universität München. The main themes are modeling principles, mathematical principles for the analysis of these models and model-based analysis of data.
518 kr
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Mathematical Modeling in Renal Physiology
Basic Approach to Age-Structured Population Dynamics
Models, Methods and Numerics
Häftad, Engelska, 2017
752 kr
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This book provides an introduction to age-structured population modeling which emphasizes the connection between mathematical theory and underlying biological assumptions.Through the rigorous development of the linear theory and the nonlinear theory alongside numerics, the authors explore classical equations that describe the dynamics of certain ecological systems. Modeling aspects are discussed to show how relevant problems in the fields of demography, ecology and epidemiology can be formulated and treated within the theory. In particular, the book presents extensions of age-structured modeling to the spread of diseases and epidemics while also addressing the issue of regularity of solutions, the asymptotic behavior of solutions, and numerical approximation. With sections on transmission models, non-autonomous models and global dynamics, this book fills a gap in the literature on theoretical population dynamics.The Basic Approach toAge-Structured Population Dynamics will appeal to graduate students and researchers in mathematical biology, epidemiology and demography who are interested in the systematic presentation of relevant models and mathematical methods.
631 kr
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The purpose of this monograph is to describe recent developments in mathematical modeling and mathematical analysis of certain problems arising from cell biology. Cancer cells and their growth via several stages are of particular interest. To describe these events, multi-scale models are applied, involving continuously distributed environment variables and several components related to particles. Hybrid simulations are also carried out, using discretization of environment variables and the Monte Carlo method for the principal particle variables. Rigorous mathematical foundations are the bases of these tools.The monograph is composed of four chapters. The first three chapters are concerned with modeling, while the last one is devoted to mathematical analysis. The first chapter deals with molecular dynamics occurring at the early stage of cancer invasion. A pathway network model based on a biological scenario is constructed, and then its mathematical structures are determined. In the second chapter mathematical modeling is introduced, overviewing several biological insights, using partial differential equations. Transport and gradient are the main factors, and several models are introduced including the Keller‒Segel systems. The third chapter treats the method of averaging to model the movement of particles, based on mean field theories, employing deterministic and stochastic approaches. Then appropriate parameters for stochastic simulations are examined. The segment model is finally proposed as an application. In the fourth chapter, thermodynamic features of these models and how these structures are applied in mathematical analysis are examined, that is, negative chemotaxis, parabolic systems with non-local term accounting for chemical reactions, mass-conservative reaction-diffusion systems, and competitive systems of chemotaxis. The monograph concludes with the method of the weak scaling limit applied to the Smoluchowski‒Poisson equation.