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    1. Medicin
    2. Medicin: allmänt
    3. Samhällsmedicin och preventiv medicin
    4. Epidemiologi och medicinsk statistik

    Forward-Time Population Genetics Simulations

    Methods, Implementation, and Applications

    AvBo Peng,Marek Kimmel

    Häftad, Engelska, 2012

    1 345 kr

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    Beskrivning

    The only book available in the area of forward-time population genetics simulations—applicable to both biomedical and evolutionary studies The rapid increase of the power of personal computers has led to the use of serious forward-time simulation programs in genetic studies. Forward-Time Population Genetics Simulations presents both new and commonly used methods, and introduces simuPOP, a powerful and flexible new program that can be used to simulate arbitrary evolutionary processes with unique features like customized chromosome types, arbitrary nonrandom mating schemes, virtual subpopulations, information fields, and Python operators.The book begins with an overview of important concepts and models, then goes on to show how simuPOP can simulate a number of standard population genetics models—with the goal of demonstrating the impact of genetic factors such as mutation, selection, and recombination on standard Wright-Fisher models. The rest of the book is devoted to applications of forward-time simulations in various research topics.Forward-Time Population Genetics Simulations includes: An overview of currently available forward-time simulation methods, their advantages, and shortcomings An overview and evaluation of currently available software A simuPOP tutorial Applications in population genetics Applications in genetic epidemiology, statistical genetics, and mapping complex human diseases The only book of its kind in the field today, Forward-Time Population Genetics Simulations will appeal to researchers and students of population and statistical genetics.

    Produktinformation

    • Utgivningsdatum:2012-03-02
    • Mått:153 x 229 x 16 mm
    • Vikt:417 g
    • Format:Häftad
    • Språk:Engelska
    • Antal sidor:256
    • Förlag:John Wiley and Sons Ltd
    • ISBN:9780470503485

    Utforska kategorier

    • Epidemiologi och medicinsk statistik inom Medicin
    • Medicinsk genetik inom Medicin
    • Biovetenskap inom Naturvetenskap och teknik

    Mer om författaren

    Bo Peng, PHD, is an assistant professor in the Department of Genetics at The University of Texas MD Anderson Cancer Center. With his degrees in applied mathematics and biostatistics, he is applying advanced computational techniques such as parallel computation and large-scale simulations to research topics in population genetics, genetic epidemiology, and bioinformatics. Marek Kimmel, PHD, is Director of the Doctoral Program in Bioinformatics and Statistical Genetics and head of the Bioinformatics Group at Rice University. He holds joint appointments as Professor of Statistics at Rice University, Professor of Biostatistics and Applied Mathematics at MD Anderson Cancer Center, and Professor of Biometry at The University of Texas School of Public Health.Christopher I. Amos, PHD, is a professor in the Department of Genetics at The University of Texas MD Anderson Cancer Center. He also holds adjunct appointments at Rice University and in the Department of Epidemiology at The University of Texas School of Public Health.

    Innehållsförteckning

    • Preface ix Acknowledgments xiiiList of examples xxiii1. Basic concepts and models 11.1 Biological and genetic concepts 21.2 Population and evolutionary genetics 61.3 Statistical genetics and genetic epidemiology 172. Simulation of population genetics models 252.1 Random genetic drift 252.2 Demographic models 292.3 Mutation 312.4 Migration 342.5 Recombination and linkage disequilibrium 362.6 Natural selection 372.7 Genealogy of forward-time simulations 413. Ascertainment bias in population genetics 473.1 Introduction 473.2 Methods 493.3 Results 543.4 Discussion and Conclusions 584. Observing properties of evolving populations 634.1 Introduction 644.2 Simulation of the evolution of allele spectra 664.3 Extensions to the basic model 785. Simulating populations with complex human diseases 895.1 Introduction 895.2 Controlling disease allele frequencies at the present generation 915.3 Forward-time simulation of realistic samples 1025.4 Discussion 1196. Nonrandom mating and its applications 1256.1 Assortative mating 1266.2 More complex non-random mating schemes 1326.3 Hetergeneous mating schemes 1406.4 Simulation of age structured populations 145Appendix: Forward-time simulations using stimulPOP 157A.1 Introduction 157A.2 Population 160A.3 Operators 172A.4 Evolve on or more populations 181A.5 A complete stimuPOP script 185