Data Integration, Manipulation and Visualization of Phylogenetic Trees

AvGuangchuang Yu

Häftad, Engelska, 2024

Del i serien Chapman & Hall/CRC Computational Biology Series

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Beskrivning

Data Integration, Manipulation and Visualization of Phylogenetic Trees introduces and demonstrates data integration, manipulation and visualization of phylogenetic trees using a suite of R packages, tidytree, treeio, ggtree and ggtreeExtra. Using the most comprehensive packages for phylogenetic data integration and visualization, contains numerous examples that can be used for teaching and learning. Ideal for undergraduate readers and researchers with a working knowledge of R and ggplot2.Key Features:Manipulating phylogenetic tree with associated data using tidy verbsIntegrating phylogenetic data from diverse sourcesVisualizing phylogenetic data using grammar of graphics

Produktinformation

Utgivningsdatum:2024-08-26
Mått:178 x 254 x 19 mm
Vikt:485 g
Format:Häftad
Språk:Engelska
Serie:Chapman & Hall/CRC Computational Biology Series
Antal sidor:255
Förlag:Taylor & Francis Ltd
ISBN:9781032245546

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Mer om författaren

Guangchuang Yu is a professor of bioinformatics, director of the Department of Bioinformatics, Southern Medical University. He earned his Ph.D. from the School of Public Health, The University of Hong Kong. As an active R user, he has authored several R packages and has supervised post-graduate students to develop a few other packages, including ggmsa, ggtreeExtra, MicrobiomeProfiler and MicrobiotaProcess.

Innehållsförteckning

1. Importing Tree with Data, 2. Manipulating Tree with Data, 3. Exporting tree with data, 4. Phylogenetic Tree Visualization, 5. Phylogenetic Tree Annotation, 6. Visual Exploration of Phylogenetic Tree, 7. Plotting tree with data, 8. Annotating Tree with Silhouette Images and Sub-plots, 9. ggtree for other tree-like objects, 10. ggtreeExtra for presenting data on a circular layout, 11. Other ggtree extensions, 12. ggtree utilities, A. Frequently asked questions, B. Related tools, Figures and Tables Publications of the ggtree package suite, References, Index